山东大学耳鼻喉眼学报 ›› 2023, Vol. 37 ›› Issue (1): 47-55.doi: 10.6040/j.issn.1673-3770.0.2022.012
• 论著 • 上一篇
王灵娃,王茹,房居高
WANG Lingwa, WANG Ru, FANG Jugao
摘要: 目的 基于生物信息学分析筛选影响喉乳头状瘤恶变进程及预后的分子标志物。 方法 从GEO和TCGA数据库分别下载成人喉乳头状瘤数据集GSE10935和喉鳞癌转录组数据,使用R语言筛选两组数据差异表达基因(DEGs)。利用韦恩图分析筛选两组共同DEGs后,使用GEPIA数据库绘制Kaplan-Meier生存曲线进行生存分析,筛选出候选基因。利用HPA数据库分析候选基因的蛋白表达情况得到关键基因后,进行单/多因素COX回归分析,及GO、KEGG功能富集分析。 结果 从GSE10935数据集筛选出112个与喉乳头状瘤发生发展相关的DEGs,从喉鳞癌转录组数据筛选出1817个与喉鳞癌发生发展相关的DEGs。通过韦恩图分析得到共同DEGs 24个。GEPIA在线网站分析显示与正常组织相比,FSCN1、MMP1、IFI27在头颈鳞癌组织(HNSCC)中高表达,ALDH3A1、HLF、MMRN1低表达,差异均有统计学意义(FSCN1:P=0.002 9、MMP1:P=0.047、IFI27:P=0.035、ALDH3A1:P=0.024、HLF:P=0.008、MMRN1:P=0.036)。生存分析显示FSCN1、MMP1、IFI27低表达组患者预后明显优于高表达组患者,ALDH3A1、HLF、MMRN1高表达组患者预后明显优于低表达组患者。HPA数据库分析候选基因免疫组化结果发现,FSCN1蛋白在HNSCC中显著高表达,而ALDH3A1蛋白低表达。进一步生存分析表明FSCN1和ALDH3A1的表达水平是影响HPV相关的HNSCC患者预后的独立风险因素。 结论 FSCN1和ALDH3A1可能是影响喉乳头状瘤恶变的关键基因,FSCN1高表达、ALDH3A1低表达显著影响HPV相关的HNSCC患者预后,可能是潜在阻滞喉乳头状瘤恶变进程的分子靶标。
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